hdf5_utilities Module Reference

Data Types
interface	hdf5_addattribute
	attached attributes of type char, integer or real to a file/dataset/group More...
interface	hdf5_read
	reads integer or float data of defined shape from file ! ToDo: order of arguments wrong More...
interface	hdf5_write
	writes integer or real data of defined shape to file ! ToDo: order of arguments wrong More...

Functions/Subroutines
subroutine	hdf5_utilities_init
	open libary and do sanity checks More...
integer(hid_t) function	hdf5_openfile (fileName, mode, parallel)
	open and initializes HDF5 output file More...
subroutine	hdf5_closefile (fileHandle)
	close the opened HDF5 output file More...
integer(hid_t) function	hdf5_addgroup (fileHandle, groupName)
	adds a new group to the fileHandle More...
integer(hid_t) function	hdf5_opengroup (fileHandle, groupName)
	open an existing group of a file More...
subroutine	hdf5_closegroup (group_id)
	close a group More...
logical function	hdf5_objectexists (loc_id, path)
	check whether a group or a dataset exists More...
subroutine	hdf5_addattribute_str (loc_id, attrLabel, attrValue, path)
	adds a string attribute to the path given relative to the location More...
subroutine	hdf5_addattribute_int (loc_id, attrLabel, attrValue, path)
	adds a integer attribute to the path given relative to the location More...
subroutine	hdf5_addattribute_real (loc_id, attrLabel, attrValue, path)
	adds a integer attribute to the path given relative to the location More...
subroutine	hdf5_addattribute_int_array (loc_id, attrLabel, attrValue, path)
	adds a integer attribute to the path given relative to the location More...
subroutine	hdf5_addattribute_real_array (loc_id, attrLabel, attrValue, path)
	adds a real attribute to the path given relative to the location More...
subroutine	hdf5_setlink (loc_id, target_name, link_name)
	set link to object in results file More...
subroutine	hdf5_read_real1 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 1 dimension More...
subroutine	hdf5_read_real2 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 2 dimensions More...
subroutine	hdf5_read_real3 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 2 dimensions More...
subroutine	hdf5_read_real4 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 4 dimensions More...
subroutine	hdf5_read_real5 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 5 dimensions More...
subroutine	hdf5_read_real6 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 6 dimensions More...
subroutine	hdf5_read_real7 (loc_id, dataset, datasetName, parallel)
	read dataset of type real with 7 dimensions More...
subroutine	hdf5_read_int1 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 1 dimension More...
subroutine	hdf5_read_int2 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 2 dimensions More...
subroutine	hdf5_read_int3 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 3 dimensions More...
subroutine	hdf5_read_int4 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer withh 4 dimensions More...
subroutine	hdf5_read_int5 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 5 dimensions More...
subroutine	hdf5_read_int6 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 6 dimensions More...
subroutine	hdf5_read_int7 (loc_id, dataset, datasetName, parallel)
	read dataset of type integer with 7 dimensions More...
subroutine	hdf5_write_real1 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 1 dimension More...
subroutine	hdf5_write_real2 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 2 dimensions More...
subroutine	hdf5_write_real3 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 3 dimensions More...
subroutine	hdf5_write_real4 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 4 dimensions More...
subroutine	hdf5_write_real5 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 5 dimensions More...
subroutine	hdf5_write_real6 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 6 dimensions More...
subroutine	hdf5_write_real7 (loc_id, dataset, datasetName, parallel)
	write dataset of type real with 7 dimensions More...
subroutine	hdf5_write_int1 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 1 dimension More...
subroutine	hdf5_write_int2 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 2 dimensions More...
subroutine	hdf5_write_int3 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 3 dimensions More...
subroutine	hdf5_write_int4 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 4 dimensions More...
subroutine	hdf5_write_int5 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 5 dimensions More...
subroutine	hdf5_write_int6 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 6 dimensions More...
subroutine	hdf5_write_int7 (loc_id, dataset, datasetName, parallel)
	write dataset of type integer with 7 dimensions More...
subroutine	hdf5_write_rotation (loc_id, dataset, datasetName, parallel)
	writes a scalar orientation dataset More...
subroutine	initialize_read (dset_id, filespace_id, memspace_id, plist_id, aplist_id, myStart, globalShape, loc_id, localShape, datasetName, parallel)
	initialize HDF5 handles, determines global shape and start for parallel read More...
subroutine	finalize_read (dset_id, filespace_id, memspace_id, plist_id, aplist_id)
	closes HDF5 handles More...
subroutine	initialize_write (dset_id, filespace_id, memspace_id, plist_id, myStart, totalShape, loc_id, myShape, datasetName, datatype, parallel)
	initialize HDF5 handles, determines global shape and start for parallel write More...
subroutine	finalize_write (plist_id, dset_id, filespace_id, memspace_id)
	closes HDF5 handles More...

Detailed Description

Author

Vitesh Shah, Max-Planck-Institut für Eisenforschung GmbH

Yi-Chin Yang, Max-Planck-Institut für Eisenforschung GmbH

Jennifer Nastola, Max-Planck-Institut für Eisenforschung GmbH

Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH

Function/Subroutine Documentation

finalize_read()

subroutine hdf5_utilities::finalize_read	(	integer(hid_t), intent(in)	dset_id,
		integer(hid_t), intent(in)	filespace_id,
		integer(hid_t), intent(in)	memspace_id,
		integer(hid_t), intent(in)	plist_id,
		integer(hid_t), intent(in)	aplist_id
	)

closes HDF5 handles

Definition at line 1818 of file HDF5_utilities.f90.

References io::io_error().

Referenced by hdf5_read_int1(), hdf5_read_int2(), hdf5_read_int3(), hdf5_read_int4(), hdf5_read_int5(), hdf5_read_int6(), hdf5_read_int7(), hdf5_read_real1(), hdf5_read_real2(), hdf5_read_real3(), hdf5_read_real4(), hdf5_read_real5(), hdf5_read_real6(), and hdf5_read_real7().

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finalize_write()

subroutine hdf5_utilities::finalize_write	(	integer(hid_t), intent(in)	plist_id,
		integer(hid_t), intent(in)	dset_id,
		integer(hid_t), intent(in)	filespace_id,
		integer(hid_t), intent(in)	memspace_id
	)

closes HDF5 handles

Definition at line 1905 of file HDF5_utilities.f90.

References io::io_error().

Referenced by hdf5_write_int1(), hdf5_write_int2(), hdf5_write_int3(), hdf5_write_int4(), hdf5_write_int5(), hdf5_write_int6(), hdf5_write_int7(), hdf5_write_real1(), hdf5_write_real2(), hdf5_write_real3(), hdf5_write_real4(), hdf5_write_real5(), hdf5_write_real6(), hdf5_write_real7(), and hdf5_write_rotation().

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hdf5_addattribute_int()

subroutine hdf5_utilities::hdf5_addattribute_int	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	attrLabel,
		integer, intent(in)	attrValue,
		character(len=*), intent(in), optional	path
	)

adds a integer attribute to the path given relative to the location

Definition at line 339 of file HDF5_utilities.f90.

References io::io_error().

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hdf5_addattribute_int_array()

subroutine hdf5_utilities::hdf5_addattribute_int_array	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	attrLabel,
		integer, dimension(:), intent(in)	attrValue,
		character(len=*), intent(in), optional	path
	)

adds a integer attribute to the path given relative to the location

Definition at line 421 of file HDF5_utilities.f90.

References io::io_error().

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hdf5_addattribute_real()

subroutine hdf5_utilities::hdf5_addattribute_real	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	attrLabel,
		real(preal), intent(in)	attrValue,
		character(len=*), intent(in), optional	path
	)

adds a integer attribute to the path given relative to the location

Definition at line 380 of file HDF5_utilities.f90.

References io::io_error().

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hdf5_addattribute_real_array()

subroutine hdf5_utilities::hdf5_addattribute_real_array	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	attrLabel,
		real(preal), dimension(:), intent(in)	attrValue,
		character(len=*), intent(in), optional	path
	)

adds a real attribute to the path given relative to the location

Definition at line 465 of file HDF5_utilities.f90.

References io::io_error().

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hdf5_addattribute_str()

subroutine hdf5_utilities::hdf5_addattribute_str	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	attrLabel,
		character(len=*), intent(in)	attrValue,
		character(len=*), intent(in), optional	path
	)

adds a string attribute to the path given relative to the location

Definition at line 293 of file HDF5_utilities.f90.

References io::io_error().

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hdf5_addgroup()

integer(hid_t) function hdf5_utilities::hdf5_addgroup	(	integer(hid_t), intent(in)	fileHandle,
		character(len=*), intent(in)	groupName
	)

adds a new group to the fileHandle

Definition at line 182 of file HDF5_utilities.f90.

References io::io_error().

Referenced by grid_mech_fem::grid_mech_fem_restartwrite(), grid_mech_spectral_basic::grid_mech_spectral_basic_restartwrite(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_restartwrite(), and results::results_addgroup().

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hdf5_closefile()

subroutine hdf5_utilities::hdf5_closefile

(

integer(hid_t), intent(in)

fileHandle

)

close the opened HDF5 output file

Definition at line 167 of file HDF5_utilities.f90.

References io::io_error().

Referenced by grid_mech_fem::grid_mech_fem_init(), grid_mech_fem::grid_mech_fem_restartwrite(), grid_mech_spectral_basic::grid_mech_spectral_basic_init(), grid_mech_spectral_basic::grid_mech_spectral_basic_restartwrite(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_init(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_restartwrite(), and results::results_closejobfile().

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hdf5_closegroup()

subroutine hdf5_utilities::hdf5_closegroup

(

integer(hid_t), intent(in)

group_id

)

close a group

Definition at line 251 of file HDF5_utilities.f90.

References io::io_error().

Referenced by grid_mech_fem::grid_mech_fem_init(), grid_mech_fem::grid_mech_fem_restartwrite(), grid_mech_spectral_basic::grid_mech_spectral_basic_init(), grid_mech_spectral_basic::grid_mech_spectral_basic_restartwrite(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_init(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_restartwrite(), results::results_closegroup(), results::results_mapping_constituent(), results::results_mapping_materialpoint(), results::results_writescalardataset_real(), results::results_writescalardataset_rotation(), results::results_writetensordataset_int(), results::results_writetensordataset_real(), results::results_writevectordataset_int(), and results::results_writevectordataset_real().

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hdf5_objectexists()

logical function hdf5_utilities::hdf5_objectexists	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in), optional	path
	)

check whether a group or a dataset exists

Definition at line 265 of file HDF5_utilities.f90.

References io::io_error().

Referenced by results::results_writescalardataset_real(), results::results_writescalardataset_rotation(), results::results_writetensordataset_int(), results::results_writetensordataset_real(), results::results_writevectordataset_int(), and results::results_writevectordataset_real().

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hdf5_openfile()

integer(hid_t) function hdf5_utilities::hdf5_openfile	(	character(len=*), intent(in)	fileName,
		character, intent(in), optional	mode,
		logical, intent(in), optional	parallel
	)

open and initializes HDF5 output file

Definition at line 119 of file HDF5_utilities.f90.

References io::io_error().

Referenced by grid_mech_fem::grid_mech_fem_init(), grid_mech_fem::grid_mech_fem_restartwrite(), grid_mech_spectral_basic::grid_mech_spectral_basic_init(), grid_mech_spectral_basic::grid_mech_spectral_basic_restartwrite(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_init(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_restartwrite(), results::results_init(), and results::results_openjobfile().

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hdf5_opengroup()

integer(hid_t) function hdf5_utilities::hdf5_opengroup	(	integer(hid_t), intent(in)	fileHandle,
		character(len=*), intent(in)	groupName
	)

open an existing group of a file

Definition at line 215 of file HDF5_utilities.f90.

References io::io_error().

Referenced by grid_mech_fem::grid_mech_fem_init(), grid_mech_spectral_basic::grid_mech_spectral_basic_init(), grid_mech_spectral_polarisation::grid_mech_spectral_polarisation_init(), and results::results_opengroup().

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hdf5_read_int1()

subroutine hdf5_utilities::hdf5_read_int1	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 1 dimension

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 812 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int2()

subroutine hdf5_utilities::hdf5_read_int2	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 2 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 853 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int3()

subroutine hdf5_utilities::hdf5_read_int3	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 3 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 893 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int4()

subroutine hdf5_utilities::hdf5_read_int4	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer withh 4 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 933 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int5()

subroutine hdf5_utilities::hdf5_read_int5	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 5 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 973 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int6()

subroutine hdf5_utilities::hdf5_read_int6	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 6 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1013 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_int7()

subroutine hdf5_utilities::hdf5_read_int7	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type integer with 7 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1053 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real1()

subroutine hdf5_utilities::hdf5_read_real1	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 1 dimension

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 531 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real2()

subroutine hdf5_utilities::hdf5_read_real2	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 2 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 571 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real3()

subroutine hdf5_utilities::hdf5_read_real3	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 2 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 611 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real4()

subroutine hdf5_utilities::hdf5_read_real4	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 4 dimensions

Parameters

[out]	dataset	read data
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 651 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real5()

subroutine hdf5_utilities::hdf5_read_real5	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 5 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 691 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real6()

subroutine hdf5_utilities::hdf5_read_real6	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 6 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 731 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_read_real7()

subroutine hdf5_utilities::hdf5_read_real7	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:,:,:), intent(out)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

read dataset of type real with 7 dimensions

Parameters

[out]	dataset	data read from file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 771 of file HDF5_utilities.f90.

References finalize_read(), initialize_read(), and io::io_error().

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hdf5_setlink()

subroutine hdf5_utilities::hdf5_setlink	(	integer(hid_t), intent(in)	loc_id,
		character(len=*), intent(in)	target_name,
		character(len=*), intent(in)	link_name
	)

set link to object in results file

Definition at line 509 of file HDF5_utilities.f90.

References io::io_error().

Referenced by results::results_setlink().

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hdf5_utilities_init()

subroutine hdf5_utilities::hdf5_utilities_init

open libary and do sanity checks

Definition at line 91 of file HDF5_utilities.f90.

References io::io_error().

Referenced by cpfem2::cpfem_initall().

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hdf5_write_int1()

subroutine hdf5_utilities::hdf5_write_int1	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 1 dimension

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1383 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int2()

subroutine hdf5_utilities::hdf5_write_int2	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 2 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1424 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int3()

subroutine hdf5_utilities::hdf5_write_int3	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 3 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1465 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int4()

subroutine hdf5_utilities::hdf5_write_int4	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 4 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1506 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int5()

subroutine hdf5_utilities::hdf5_write_int5	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 5 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1547 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int6()

subroutine hdf5_utilities::hdf5_write_int6	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 6 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1588 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_int7()

subroutine hdf5_utilities::hdf5_write_int7	(	integer(hid_t), intent(in)	loc_id,
		integer, dimension(:,:,:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type integer with 7 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1629 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real1()

subroutine hdf5_utilities::hdf5_write_real1	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 1 dimension

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1094 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real2()

subroutine hdf5_utilities::hdf5_write_real2	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 2 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1135 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real3()

subroutine hdf5_utilities::hdf5_write_real3	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 3 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1176 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real4()

subroutine hdf5_utilities::hdf5_write_real4	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 4 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1217 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real5()

subroutine hdf5_utilities::hdf5_write_real5	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 5 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1259 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real6()

subroutine hdf5_utilities::hdf5_write_real6	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 6 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1300 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_real7()

subroutine hdf5_utilities::hdf5_write_real7	(	integer(hid_t), intent(in)	loc_id,
		real(preal), dimension(:,:,:,:,:,:,:), intent(inout)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

write dataset of type real with 7 dimensions

Parameters

[in,out]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[in]	parallel	dataset is distributed over multiple processes

Definition at line 1341 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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hdf5_write_rotation()

subroutine hdf5_utilities::hdf5_write_rotation	(	integer(hid_t), intent(in)	loc_id,
		type(rotation), dimension(:), intent(in)	dataset,
		character(len=*), intent(in)	datasetName,
		logical, intent(in), optional	parallel
	)

writes a scalar orientation dataset

Parameters

[in]	dataset	data written to file
[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file

Definition at line 1673 of file HDF5_utilities.f90.

References finalize_write(), initialize_write(), and io::io_error().

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initialize_read()

subroutine hdf5_utilities::initialize_read	(	integer(hid_t), intent(out)	dset_id,
		integer(hid_t), intent(out)	filespace_id,
		integer(hid_t), intent(out)	memspace_id,
		integer(hid_t), intent(out)	plist_id,
		integer(hid_t), intent(out)	aplist_id,
		integer(hsize_t), dimension(size(localshape,1)), intent(out)	myStart,
		integer(hsize_t), dimension(size(localshape,1)), intent(out)	globalShape,
		integer(hid_t), intent(in)	loc_id,
		integer(hsize_t), dimension(:), intent(in)	localShape,
		character(len=*), intent(in)	datasetName,
		logical, intent(in)	parallel
	)

initialize HDF5 handles, determines global shape and start for parallel read

Parameters

[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[out]	globalshape	shape of the dataset (all processes)

Definition at line 1749 of file HDF5_utilities.f90.

References io::io_error(), numerics::worldrank, and numerics::worldsize.

Referenced by hdf5_read_int1(), hdf5_read_int2(), hdf5_read_int3(), hdf5_read_int4(), hdf5_read_int5(), hdf5_read_int6(), hdf5_read_int7(), hdf5_read_real1(), hdf5_read_real2(), hdf5_read_real3(), hdf5_read_real4(), hdf5_read_real5(), hdf5_read_real6(), and hdf5_read_real7().

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initialize_write()

subroutine hdf5_utilities::initialize_write	(	integer(hid_t), intent(out)	dset_id,
		integer(hid_t), intent(out)	filespace_id,
		integer(hid_t), intent(out)	memspace_id,
		integer(hid_t), intent(out)	plist_id,
		integer(hsize_t), dimension(size(myshape,1)), intent(out)	myStart,
		integer(hsize_t), dimension(size(myshape,1)), intent(out)	totalShape,
		integer(hid_t), intent(in)	loc_id,
		integer(hsize_t), dimension(:), intent(in)	myShape,
		character(len=*), intent(in)	datasetName,
		integer(hid_t), intent(in)	datatype,
		logical, intent(in)	parallel
	)

initialize HDF5 handles, determines global shape and start for parallel write

Parameters

[in]	loc_id	file or group handle
[in]	datasetname	name of the dataset in the file
[out]	totalshape	shape of the dataset (all processes)

Definition at line 1842 of file HDF5_utilities.f90.

References io::io_error(), numerics::worldrank, and numerics::worldsize.

Referenced by hdf5_write_int1(), hdf5_write_int2(), hdf5_write_int3(), hdf5_write_int4(), hdf5_write_int5(), hdf5_write_int6(), hdf5_write_int7(), hdf5_write_real1(), hdf5_write_real2(), hdf5_write_real3(), hdf5_write_real4(), hdf5_write_real5(), hdf5_write_real6(), hdf5_write_real7(), and hdf5_write_rotation().

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